10 Best Ecommerce Accounting Software In 2023

Zoho Books is an accounting platform that’s included within the Zoho business management suite.

Why I picked Zoho Books: If you currently use any of the products within Zoho, Zoho Books is another application you can use to manage the accounting side of your business. Zoho Books is a cloud-based accounting platform that can help you manage invoicing, inventory, and expense tracking. It’s an end-to-end accounting solution that can automate financial workflows, so you don’t need to worry about time-consuming tasks.

Zoho Books is suitable for small businesses that need a solution that will scale with them as they grow, but it’s fully capable for medium businesses across any industry. The software can help you manage finances, prepare tax information, and work across multiple departments. Zoho Books also provides convenient reporting tools that enable you to get an overview of your store’s performance.

Zoho Books Standout Features and Integrations

Features include invoicing, estimate creation, customer portals, expense receipts management, bill generation, banking reconciliation, project billing, inventory management, sales orders, purchase orders, sales tax tracking, and automated workflows.

Integrations include Avalara, Campaign Monitor, Contractbook, Dropbox, Evernote, Fundbox, Google Drive, HubSpot CRM, Office 365, Slack, Surepayroll, Twilio, Wrike, Zapier, Zendesk, and other software options.

Bench is an ecommerce accounting software that provides hands-off financial tools.

Why I picked Bench: The platform is a done-for-you bookkeeping tool that provides the same accounting visual reporting as other options, but it has the bonus of an expert bookkeeper to help you when needed. Bench can help take vital accounting tasks off your hands when you’re having difficulties keeping up with your growing ecommerce store. The vendor has experts to work behind the scenes for you and keep your financial records up-to-date and tax-compliant. Bench also provides expert accounting advice so you can make sense of the reports you see when using the platform.

Bench works for businesses of all sizes that need an all-in-one accounting tool kit. It can connect with the big ecommerce platforms, such as Shopify and BigCommerce. Bench will provide the same accuracy as other options, but the software can save you time because it can handle administrative bookkeeping tasks as well as importing transactions.

Bench Standout Features and Integrations

Features include one-on-one expert support, tax-ready financials, tax filing, financial reporting, expert bookkeeping, custom tax support, cash management, purchase orders, expense tracking, general ledgers, and bank reconciliation.

Integrations include Amazon, BigCommerce, Freshbooks, Shoeboxed, Shopify, Square POS, and Stripe.

Xero supports ecommerce businesses with growing teams by providing plans that can accommodate unlimited users.

Why I picked Xero: Compared to other ecommerce account software, what sets Xero apart is its ability to work with growing teams. Typically, accounting software will support up to 25 users, but Xero can work with an unlimited number of users. This is especially useful for collaboration between multiple business departments. Even in the lowest payment tier, you can add everyone to your team.

Xero is suitable for small-to-medium ecommerce businesses that need a simple but powerful accounting solution. It simplifies your accounting processes by placing everything you need, from balance sheets to profit and loss reports, just one click away. The platform is cloud-based, so you can sync Xero across multiple devices from anywhere and get real-time updates and get the latest information.

Xero Standout Features and Integrations

Features include bill tracking, cash flow overviews, scheduled payments, detailed payables reports, spending management, expense management, expense claim submission, receipts scanning, bank transactions, and payment gateways.

Integrations include Birdeye, Domo, Freshdesk, Harvest, Hevo, HoneyBook, intelliHR, Koinly, PandaDoc, Pipedrive, ProjectManager, Recurly, Stripe, TrueCommerce, Wrike, and other software options.

Quickbooks Online provides a comprehensive accounting platform that allows businesses to organize finances from one place.

Why I picked Quickbooks Online: The platform has been around for a long time and provides comprehensive features that will help you manage cash flow and taxes. Quickbooks Online makes it easy for you to manage balance sheets, expense tracking, inventory management, invoicing, and other business essentials. What sets Quickbooks Online apart is its ability to automatically look up sales taxes in different jurisdictions and tell your customers how much they owe in sales tax.

Quickbooks Online is a leading accounting software for small-to-medium-sized businesses that need a platform that provides everything to help manage finances from one place. The software can automatically include all line items, shipping, and tax information on each order from your ecommerce store. Quickbooks Online can also quickly import orders and refunds from your online store into its system and ensure everything is up to date.

Quickbooks Online Standout Features and Integrations

Features include business funding, bill payment and management, expense management, sales tax calculation, contractor payments, cash flow planning, project profitability, financial reports, inventory management, and order tracking and fulfillment.

Integrations include Chargebee, Clockify, Domo, Freshdesk, Hubstaff, Ledgible, Mailchimp, Nutshell, Pipedrive, ProjectManager, Salesforce, Wrike, Zapier, Zendesk, Zoho CRM, and other software options.

Quickbooks Online costs from $30/month when paying monthly or $15/month when paid annually. Quickbooks Online provides a free 30-day trial for new subscribers.

Wave Accounting is a basic accounting platform that’s free for all businesses to use.

Why I picked Wave Accounting: The platform is a popular choice because its accounting and invoicing features are free. Wave Accounting allows you to send unlimited customer invoices, set up unlimited organizations, and track all accounts at no cost. You can also use the bank reconciliation feature to link your bank accounts, PayPal accounts, and other data sources for real-time transaction tracking.

Wave Accounting is an excellent choice for small businesses that need a powerful, free, or low-cost accounting system. It’s capable of simplifying your ecommerce store’s financial accounting, invoicing, and tax returns. However, if customers are paying directly from your invoices, you’re required to pay a percentage.

Wave Accounting Standout Features and Integrations

Features include billing portals, online invoicing, customizable invoices, tax management, payroll management, general ledgers, purchase orders, cash management, expense tracking, fixed asset management, fund accounting, and bank reconciliation.

Integrations include Avaza, Boss Insights, Contractbook, Datameer, Easyflow, Google Drive, HoneyBook, HubSpot CRM, Insightly, Integrately, MinuteDock, Pabbly Connect, Railz, Stripe, Zapier, and other software options.

Acumatica Cloud ERP provides businesses with accounting tools they can customize to fit their changing needs.

Why I picked Acumatica Cloud ERP: The platform provides extensive customization capabilities that will help you tailor the tool to align with your accounting needs. If you have an experienced developer on your team, you can go further with the customization to tailor your processes and use AI and machine learning technologies to fit your ecommerce store. With Acumatica Cloud ERP, you get a tool that is ready to scale with your business as it grows and integrates with the way your online store works.

Acumatica Cloud ERP is suitable for any sized business that needs an accounting platform that makes all financial data available anytime, anywhere, on any device. With its integrated workflow capabilities, you can gain visibility into financial, project accounting, and inventory management data. Acumatica Cloud ERP also includes the ability to link documents to financial transactions, which will help you simplify information sharing and reduce auditing expenses.

Acumatica Cloud ERP Standout Features and Integrations

Features include order management, expense tracking, billing and invoicing, bank reconciliation, fixed asset management, cash management, accounts payable and receivable, KPIs, sales forecasting, shipping management, and warehouse management.

Integrations include Avalara, BestCPQ, BigCommerce, BudgetEngine, Cleo Integration Cloud, Dropbox, EasyEXP365, HubSpot Operations Hub, Microsoft 365, Paya, Salesforce, ShipMonk, Shopify, Tableau, TrueCommerce, and other software options.

Kashoo simplifies accounting for businesses by providing simple features to help manage financials.

Why I picked Kashoo: The software provides simple features that will help you manage your business’s accounting easily. Kashoo provides basic accounting features, such as recurring invoicing and automatically connecting to bank and credit card accounts for quick reconciliation. If you have multiple stores, you can use Kashoo to keep track of all your companies in the same system.

Kashoo is suitable for small businesses that want to automate much of the administrative work that’s involved in accounting. It uses machine learning algorithms to understand your business the more you use it. Kashoo automatically categorizes transactions and organizes them to help you save time and money. The software also has a Smart Inbox feature that automatically tracks vendors that you regularly do business with and prioritizes their emails.

Kashoo Standout Features and Integrations

Features include cash management, billing and invoicing, accounts payable and receivable, general ledgers, purchase orders, and tax management.

Integrations include 1Password Business, Codat, Google Workspace, Green Project, Square Payroll, Uplinq, and other software options.

A2X helps businesses focus on their ecommerce stores by integrating with a wide variety of third-party applications to automate accounting processes.

Why I picked A2X: The software is a cloud-based ecommerce accounting solution that can help you direct transactional data from sales platforms such as Shopify, BigCommerce, and Amazon. A2X integrates with other popular ecommerce accounting software, such as Xero and Quickbooks, to easily migrate to your financial records. A2X acts as the missing piece that connects these tools to simplify your back office and unlock new opportunities.

A2X helps businesses of all sizes automate their accounting processes. It can properly categorize and summarize all your transaction to give you complete cash flow visibility. A2X can quickly reconcile your payouts from your sales platforms and automatically make the necessary adjustments to your general ledger to ensure financial accuracy and save time in detecting errors.

A2X Standout Features and Integrations

Features include general ledgers, billing and invoicing, bank reconciliation, multi-currency accounting, analytics and reporting, order management, sales tracking and analysis, inventory management, sales channel management, and data synchronization.

Integrations include Amazon, eBay, Etsy, NetSuite, Quickbooks, Sage Business Cloud Accounting, Shopify, Walmart, and Xero.

Multiview ERP helps businesses break down data silos in their accounting to get more financial visibility.

Why I picked Multiview ERP: The platform is an enterprise resource planning tool that provides you with a single source of truth to enable more visibility in your accounting data. Multiview ERP uses robust features, such as its general ledger capabilities, to give you timely access to the financial information you need. Its business intelligence tools will help you drill down to get the most in-depth finance data from your dashboards and accounting statements.

Multiview ERP is built for any sized business that needs a highly robust accounting tool that’s data-centric. It’s a fully integrated budgeting and forecasting suite that will help you get greater control of data visualizations and forecast accurate financial outlooks. Multiview ERP’s multi-dimensional capabilities provide near-limitless and fully scalable reporting options.

Multiview ERP Standout Features and Integrations

Features include project accounting, general ledgers, fund accounting, accounts payable and receivable, expense tracking, bank reconciliation, billing and invoicing, fixed asset management, cash management, tax management, and purchase orders.

Integrations include ancora Software, Avalara, Azalea EHR, Cerner, EasyVoice, EpicCare EMR, John Daniel Associates, MDI Solutions, Paylocity, Paymerang, and Salesforce.

NetSuite ERP offers ecommerce accounting features for large enterprise organizations.

Why I picked NetSuite ERP: The platform specifically helps large enterprises with its cloud-based financial and accounting features. NetSuite ERP can help your business design, transform, and simplify your accounting operations and processes. The software combines foundational finance and accounting capabilities with robust compliance management. This combination can enhance your store’s performance and efficiency while reducing costs.

NetSuite ERP offers large enterprises features you might not normally find in other accounting software. I can support global accounting processes if your store operates in multiple countries worldwide. The analytics within the NetSuite ERP platform will help you understand what you need to do with your accounting operations and how your actions are helping the company.

NetSuite ERP Standout Features and Integrations

Features include accounts payable and receivable, cash management, billing and invoicing, fixed asset management, tax management, multi-currency accounting, general ledgers, purchase orders, expense tracking, and project accounting.

Integrations include BambooHR, Constant Contact, DealRoom, DocuSign, Domo, Fieldmagic, HubSpot Marketing Hub, Ledgible, Mailchimp, Orange Logic, Project Insight, Recurly, TrueCommerce, Twilio Flex, Zendesk, and other software options.